Extended structures hydrogen bonding

Beton and co-workers extended the hydrogen bonding approach to two-component systems, generating a number of structures that utilise different molecular motifs.24 26 In the case of perylene tetracarboxylic diimide (PTCDI) co-adsorbed with melamine (1,3,5-triazine-2,4,6-triamine) on a silver-terminated silicon surface, a network is formed in which the straight edges correspond to PTCDI with melamine at the vertices (Figure 11.6). The network shows large-area pores that the authors used to trap heptamers of C6o molecules. 

P-pleated sheet one of the most important types of secondary structure, in which the protein backbone is almost fully extended with hydrogen bonding between adjacent strands (4.3)... 

The structure of the boundary layers of water depends on the nature of the surface. Near a hydrophilic surface this stmcture must be essentially different from that on a hydrophobic substrate because of the absence of hydrogen bonds between water and the surface in the latter case. When the surface is chemically and physically inert, the inability of the water molecules to extend their hydrogen bond structure into such a surface could have the same effect as heating. If the surface interacts with water, the inability of those molecules forcibly oriented near the surface to maintain normal hydrogen bonding with their neighbors creates the same type of perturbation [172]. 

Figure 2.5 Schematic illustrations of antiparallel (3 sheets. Beta sheets are the second major element of secondary structure in proteins. The (3 strands are either all antiparallel as in this figure or all parallel or mixed as illustrated in following figures, (a) The extended conformation of a (3 strand. Side chains are shown as purple circles. The orientation of the (3 strand is at right angles to those of (b) and (c). A p strand is schematically illustrated as an arrow, from N to C terminus, (bj Schematic illustration of the hydrogen bond pattern in an antiparallel p sheet. Main-chain NH and O atoms within a p sheet are hydrogen bonded to each other.

Pleated p sheet (Section 27.19) Type of protein secondary structure characterized by hydrogen bonds between NH and C=0 groups of adjacent parallel peptide chains. The individual chains are in an extended zigzag conformation. 

There are several other far less common types of helices found in proteins. The most common of these is the Sjq helix, which contains 3.0 residues per turn (with 10 atoms in the ring formed by making the hydrogen bond three residues up the chain). It normally extends over shorter stretches of sequence than the a-helix. Other helical structures include the 27 ribbon and the 77-helix, which has 4.4 residues and 16 atoms per turn and is thus called the 4.4ig helix. 

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