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Dynamics Simulations of Nucleic Acids

V. Tsui and D. A. Case, Molecular dynamics simulations of nucleic acids with a generalized bom solvation model, J. Am. Chem. Soc. 122 2489 (2000). [Pg.93]

Cheatham, T.E., 3rd and Young, M.A. (2000) Molecular dynamics simulation of nucleic acids successes, limitations, and promise. Biopolymers 56, 232-256. [Pg.418]

MacKerell Jr., A. D., and Nilsson, L. (2008J. Molecular dynamics simulations of nucleic acid-protein complexes. Current opinion in structural biology 18, 2, pp. 194-199. [Pg.568]

Auffmger P, Westhof E (1997) Molecular dynamics simulations of nucleic acids. Rev Comp Chem ll(2) 317-328... [Pg.54]

Molecular Dynamics Simulations of Nucleic Acids Nucleic... [Pg.788]

Usually refers to a method of solving Newton s equations of classical mechanics numerically, in order to propagate the positions and velocities of a system of molecules forward in time and thus to explore the phase space of the system. See Molecular Dynamics and Hybrid Monte Carlo in Systems with Multiple Time Scales and Long-range Forces Reference System Propagator Algorithms Molecular Dynamics DMA Molecular Dynamics Simulations of Nucleic Acids Molecular Dynamics Studies of Lipid Bilayers and Molecular Dynamics Techniques and Applications to Proteins. [Pg.1614]

Molecular Dynamics DNA Molecular Dynamics Simulations of Nucleic Acids Molecular Dynamics Studies of Lipid Bilayers Molecular Dynamics Techniques and Applications to Proteins. [Pg.1619]

Molecular dynamics simulations of nucleic acid systems have lead to a wealth of data summarized in this chapter. From these simulations emeige a dynamical picture which gains in sharpness and coherence with the Joint development of MD methodologies and experimental knowledge. [Pg.1637]


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