Deprotonation, oxygen atom

Fig. 10. Pharmacophores for angiotension-converting enzyme. Distances in nm. (a) The stmcture of a semirigid inhibitor and distances between essential atoms from which one pharmacophore was derived (79). (b) In another pharmacophore, atom 1 is a potential zinc ligand (sulfhydryl or carboxylate oxygen), atom 2 is a neutral hydrogen bond acceptor, atom 3 is an anion (deprotonated sulfur or charged oxygen), atom 4 indicates the direction of a hydrogen bond to atom two, and atom 5 is the central atom of a carboxylate, sulfate, or phosphate of which atom 3 is an oxygen, or atom 5 is an unsaturated carbon when atom 3 is a deprotonated sulfur. The angle 1- -2- -3- -4 is —135 to —180° or 135 to 180°, and 1- -2- -3- -5 is —90 to 90°.

The dehydration occurs by initial reaction of SOCl2 on the nucleophilic amide oxygen atom, followed by deprotonation and a subsequent E2-like elimination reaction. 

A fairly strong base is required to deprotonate an alcohol. By removing the proton, we are forming a negative charge on an oxygen atom (an alkoxide ion). Therefore, in... 

Figure 5. Cartoon models of the reaction of methanol with oxygen on Cu(llO). 1 A methanol molecule arrives from the gas phase onto the surface with islands of p(2xl) CuO (the open circles represent oxygen, cross-hatched are Cu). 2,3 Methanol diffuses on the surface in a weakly bound molecular state and reacts with a terminal oxygen atom, which deprotonates the molecule in 4 to form a terminal hydroxy group and a methoxy group. Another molecule can react with this to produce water, which desorbs (5-7). Panel 8 shows decomposition of the methoxy to produce a hydrogen atom (small filled circle) and formaldehyde (large filled circle), which desorbs in panel 9. The active site lost in panel 6 is proposed to be regenerated by the diffusion of the terminal Cu atom away from the island in panel 7.

Bisphenol A, whose official chemical name is 2,2-bis(4-hydroxyphenyl)propane, is a difunctional monomer with two reactive hydroxyl groups, as shown in Fig. 20,2. It polymerizes svith dicarbonyl organic monomers, such as phosgene or diphenyl carbonate, which are illustrated in Fig. 20.3. During polymerization, shown in Fig. 20.4, the hydroxyl groups of the bisphenol A deprotonate in the presence of a base. After deprotonation, the oxygen atoms on the bisphenol A residue form ester bonds with the dicarbonyl compounds. The polymerization process terminates when a monohydric phenol reacts with the growing chain end. 

The least polar and most acceptable version of the mechanism involves a concerted formation, addition, and deprotonation of the hydroxyl cation, a process that amounts simply to the direct transfer of an oxygen atom.284... 

The attack of a cation on the oxygen atom of SENA should give rise to iminium cations, which can be stabilized by deprotonation or desilylation. (These possibilities will be considered in detail in Section 3.5.)... 

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