D,/.-Glyceraldehyde

HC CH(0H) CH20H. optically active. D-glyceraldehyde is a colourless syrup. May be prepared by mild oxidation of glycerol or by hydrolysis of glyceraldehyde acetal (prepared by oxidation of acrolein acetol). DL-glyceraldehyde forms colourless dimers, m.p. IBS-S C. Converted to methylglyoxal by warm dilute sulphuric acid. The enantiomers... 

The particular aldotetrose just shown is called d erythrose The prefix d tells us that the configuration at the highest numbered chirality center is analogous to that of d (+) glyceraldehyde Its mirror image is l erythrose... 

Highest numbered chirality center has configuration analogous to that of D glyceraldehyde -... 

As shown for the aldotetroses an aldose belongs to the d or the l series accord mg to the configuration of the chirality center farthest removed from the aldehyde func tion Individual names such as erythrose and threose specify the particular arrangement of chirality centers within the molecule relative to each other Optical activities cannot be determined directly from the d and l prefixes As if furns ouf bofh d eryfhrose and D fhreose are levorofafory buf d glyceraldehyde is dexfrorofafory... 

This cleavage is a retro aldol reaction It is the reverse of the process by which d fruc tose 1 6 diphosphate would be formed by aldol addition of the enolate of dihydroxy acetone phosphate to d glyceraldehyde 3 phosphate The enzyme aldolase catalyzes both the aldol addition of the two components and m glycolysis the retro aldol cleavage of D fructose 1 6 diphosphate... 

Further steps m glycolysis use the d glyceraldehyde 3 phosphate formed m the aldolase catalyzed cleavage reaction as a substrate Its coproduct dihydroxyacetone phosphate is not wasted however The enzyme triose phosphate isomerase converts dihydroxyacetone phosphate to d glyceraldehyde 3 phosphate which enters the glycol ysis pathway for further transformations... 

TKsubstrate pNZYTffiS IN ORGANIC SYNTHESIS] (Vol 9) D-Glyceraldehyde-3-phosphate[591-57-l]aldolase-cataly zed additions... 

Fig. 1. The family of D-aldoses derive from D-glyceraldehyde by chain extension at the carbonyl carbon atom.

There are two distinct groups of aldolases. Type I aldolases, found in higher plants and animals, require no metal cofactor and catalyze aldol addition via Schiff base formation between the lysiae S-amino group of the enzyme and a carbonyl group of the substrate. Class II aldolases are found primarily ia microorganisms and utilize a divalent ziac to activate the electrophilic component of the reaction. The most studied aldolases are fmctose-1,6-diphosphate (FDP) enzymes from rabbit muscle, rabbit muscle adolase (RAMA), and a Zn " -containing aldolase from E. coli. In vivo these enzymes catalyze the reversible reaction of D-glyceraldehyde-3-phosphate [591-57-1] (G-3-P) and dihydroxyacetone phosphate [57-04-5] (DHAP). 

The TK-catalyzed reaction requires the presence of thiamine pyrophosphate and Mg " as cofactors. Although the substrate specificity of the enzyme has not been thoroughly investigated, it has been shown that the enzyme accepts a wide variety of 2-hydroxyaldehydes including D-glyceraldehyde 3-phosphate [591-57-1], D-glyceraldehyde [453-17-8], D-ribose 5-phosphate /47(9(9-2%/7, D-erythrose 4-phosphate and D-erythrose [583-50-6] (139,149—151). 

The chemical reaction catalyzed by triosephosphate isomerase (TIM) was the first application of the QM-MM method in CHARMM to the smdy of enzyme catalysis [26]. The study calculated an energy pathway for the reaction in the enzyme and decomposed the energetics into specific contributions from each of the residues of the enzyme. TIM catalyzes the interconversion of dihydroxyacetone phosphate (DHAP) and D-glyceraldehyde 3-phosphate (GAP) as part of the glycolytic pathway. Extensive experimental studies have been performed on TIM, and it has been proposed that Glu-165 acts as a base for deprotonation of DHAP and that His-95 acts as an acid to protonate the carbonyl oxygen of DHAP, forming an enediolate (see Fig. 3) [58]. 

Figure 3 A possible mechanism for the isomerization of dihydroxyacetone phosphate (DHAP) to D glyceraldehyde 3 phosphate (GAP) by the enzyme triosephosphate isomerase (TIM). The general acid (Glu 165) and general base (His 95) are shown.

At the present time, use of the Fischer convention is almost entirely restricted to carbohydrates, amino acids, and biologically important molecules of closed related structural types. The problem with more general use is that there are no adequate rules for deciding whether a diiral atom is like D-glyceraldehyde or L-glyceraldehyde when the structures are not closely similar to the reference molecules. This relationship is clear for carbohydrates and amino acids. 

A non-linear regression analysis is employed using die Solver in Microsoft Excel spreadsheet to determine die values of and in die following examples. Example 1-5 (Chapter 1) involves the enzymatic reaction in the conversion of urea to ammonia and carbon dioxide and Example 11-1 deals with the interconversion of D-glyceraldehyde 3-Phosphate and dihydroxyacetone phosphate. The Solver (EXAMPLEll-l.xls and EXAMPLEll-3.xls) uses the Michaehs-Menten (MM) formula to compute v i- The residual sums of squares between Vg(,j, and v j is then calculated. Using guessed values of and the Solver uses a search optimization technique to determine MM parameters. The values of and in Example 11-1 are ... 

Figures 11-7 and 11-8 show plots of velocity versus substrate concentration of the interconversion of D-glyceraldehyde 3-Phosphate, and the conversion of urea, respectively.

Suggest a reasonable structure for the intermediate in the con- version of dihydroxyacetone phosphate to D-glyceraldehyde 3-phosphate. J... 

From this, it is clear that D-glyceraldehyde is (i )-glyceraldehyde, and L-alanine is (S)-alanine (see figure). Interestingly, the u-car-bon configuration of all the L-amino acids except for cysteine , (S). Cysteine, by virtue of its thiol group, is in fact (i )-cysteine. 

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