Cytochrome photosynthetic

Many key protein ET processes have become accessible to theoretical analysis recently because of high-resolution x-ray stmctural data. These proteins include the bacterial photosynthetic reaction centre [18], nitrogenase (responsible for nitrogen fixation), and cytochrome c oxidase (the tenninal ET protein in mammals) [19, 20]. Although much is understood about ET in these molecular machines, considerable debate persists about details of the molecular transfonnations. 

Electron Transport Between Photosystem I and Photosystem II Inhibitors. The interaction between PSI and PSII reaction centers (Fig. 1) depends on the thermodynamically favored transfer of electrons from low redox potential carriers to carriers of higher redox potential. This process serves to communicate reducing equivalents between the two photosystem complexes. Photosynthetic and respiratory membranes of both eukaryotes and prokaryotes contain stmctures that serve to oxidize low potential quinols while reducing high potential metaHoproteins (40). In plant thylakoid membranes, this complex is usually referred to as the cytochrome b /f complex, or plastoquinolplastocyanin oxidoreductase, which oxidizes plastoquinol reduced in PSII and reduces plastocyanin oxidized in PSI (25,41). Some diphenyl ethers, eg, 2,4-dinitrophenyl 2 -iodo-3 -methyl-4 -nitro-6 -isopropylphenyl ether [69311-70-2] (DNP-INT), and the quinone analogues,... 

Despite considerable efforts very few membrane proteins have yielded crystals that diffract x-rays to high resolution. In fact, only about a dozen such proteins are currently known, among which are porins (which are outer membrane proteins from bacteria), the enzymes cytochrome c oxidase and prostaglandin synthase, and the light-harvesting complexes and photosynthetic reaction centers involved in photosynthesis. In contrast, many other membrane proteins have yielded small crystals that diffract poorly, or not at all, using conventional x-ray sources. However, using the most advanced synchrotron sources (see Chapter 18) it is now possible to determine x-ray structures from protein crystals as small as 20 pm wide which will permit more membrane protein structures to be elucidated. 

Figure 12.14 The three-dimensional structure of a photosynthetic reaction center of a purple bacterium was the first high-resolution structure to be obtained from a membrane-bound protein. The molecule contains four subunits L, M, H, and a cytochrome. Subunits L and M bind the photosynthetic pigments, and the cytochrome binds four heme groups. The L (yellow) and the M (red) subunits each have five transmembrane a helices A-E. The H subunit (green) has one such transmembrane helix, AH, and the cytochrome (blue) has none. Approximate membrane boundaries are shown. The photosynthetic pigments and the heme groups appear in black. (Adapted from L. Stryer, Biochemistry, 3rd ed. New York ...

The structure of the UQ-cyt c reductase, also known as the cytochrome bc complex, has been determined by Johann Deisenhofer and his colleagues. (Deisenhofer was a co-recipient of the Nobel Prize in Chemistry for his work on the structure of a photosynthetic reaction center [see Chapter 22]). The complex is a dimer, with each monomer consisting of 11 protein subunits and 2165 amino acid residues (monomer mass, 248 kD). The dimeric structure is pear-shaped and consists of a large domain that extends 75 A into the mito-... 

FIGURE 22.17 The R. viridis reaction center is coupled to the cytochrome h/Cl complex through the quinone pool (Q). Quinone molecules are photore-duced at the reaction center Qb site (2 e [2 hv] per Q reduced) and then diffuse to the cytochrome h/ci complex, where they are reoxidized. Note that e flow from cytochrome h/ci back to the reaction center occurs via the periplasmic protein cytochrome co- Note also that 3 to 4 are translocated into the periplasmic space for each Q molecule oxidized at cytochrome h/ci. The resultant proton-motive force drives ATP synthesis by the bacterial FiFo ATP synthase. (Adapted from Deisenhofer, and Michel, H., 1989. The photosynthetic reaction center from the purple bac-terinm Rhod.opseud.omoaas viridis. Science 245 1463.)... 

A decade after the discovery of the Rieske protein in mitochondria (90), a similar FeS protein was identified in spinach chloroplasts (91) on the basis of its unique EPR spectrum and its unusually high reduction potential. In 1981, the Rieske protein was shown to be present in purified cytochrome Sg/complex from spinach (92) and cyanobacteria (93). In addition to the discovery in oxygenic photosynthesis, Rieske centers have been detected in both single-RC photosynthetic systems [2] (e.g., R. sphaeroides (94), Chloroflexus (95)) and [1] (Chlo-robium limicola (96, 97), H. chlorum (98)). They form the subject of a review in this volume. 

In contrast to common usage, the distinction between photosynthetic and respiratory Rieske proteins does not seem to make sense. The mitochondrial Rieske protein is closely related to that of photosynthetic purple bacteria, which represent the endosymbiotic ancestors of mitochondria (for a review, see also (99)). Moreover, during its evolution Rieske s protein appears to have existed prior to photosynthesis (100, 101), and the photosynthetic chain was probably built around a preexisting cytochrome be complex (99). The evolution of Rieske proteins from photosynthetic electron transport chains is therefore intricately intertwined with that of respiration, and a discussion of the photosynthetic representatives necessarily has to include excursions into nonphotosynthetic systems. 

Studies (see, e.g., (101)) indicate that photosynthesis originated after the development of respiratory electron transfer pathways (99, 143). The photosynthetic reaction center, in this scenario, would have been created in order to enhance the efficiency of the already existing electron transport chains, that is, by adding a light-driven cycle around the cytochrome be complex. The Rieske protein as the key subunit in cytochrome be complexes would in this picture have contributed the first iron-sulfur center involved in photosynthetic mechanisms (since on the basis of the present data, it seems likely to us that the first photosynthetic RC resembled RCII, i.e., was devoid of iron—sulfur clusters). 

Figure 12.2a. Photosynthetic Z-scheme for green plants. Abbreviations not included in the text are PQ, plastiquinone Cyt bse, a form of cytochrome b absorbing at 564 nm FD, ferredoxin FP a flavoprotein. Long vertical arrows indicate steps arising from photoactivation of pigment reaction centers dashed arrows indicate uncertain pathways.0185...

Cytochromes, catalases, and peroxidases all contain iron-heme centers. Nitrite and sulfite reductases, involved in N-O and S-O reductive cleavage reactions to NH3 and HS-, contain iron-heme centers coupled to [Fe ] iron-sulfur clusters. Photosynthetic reaction center complexes contain porphyrins that are implicated in the photoinitiated electron transfers carried out by the complexes. 

Let us pass to other cytochromes. Cytochrome f (or cytochrome C552) (FW = 15 000), the crystal structure of which is known,11 is an electron carrier present in the photosynthetic chain and also possesses a positive overall charge. It exhibits a reversible Fe(III)/Fe(II) reduction at a gold electrode modified with 4,4/-dithiopyridine,12 Figure 10. 

While the results of this work are encouraging, it is clear that the structural definition of mutant proteins of this type is critical to development of rational interpretation of the results if for no other reason than that the structural perturbation introduced is presumably greater than for simple point mutations. Moreover, it would be particularly interesting to compare the functional properties of mutants compared in this manner in assays involving protein-protein reactions relevant to the species of cytochrome c on which the mutagenesis is based. For example, comparison of the activities of wild-type yeast cytochrome c with that of a loop-insertion mutant modelled on a photosynthetic cytochrome c in the reaction with the photosynthetic reaction center could help define the structural elements involved in the cytochrome c binding domain for the reaction center. 

The first cytochrome to be recognised as a component of the photosynthetic electron transport chain was cytochrome f [142]. The properties of cytochrome f have been reviewed [143,144], and amino-acid sequence information is available for pea, spinach, wheat and tobacco [145]. The axial ligand to the heme-Fe... 

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