Comparative maps

Kos, C. H., et al. Comparative mapping of Na+-phosphate cotransporter genes, NPT1 and NPT2, in human and rabbit. Cytogenet. Cell. Genet. 

A comparative map of mouse, rat and Chinese hamster genomes by interspecies chromosome... 

Identify which protonation reaction (alkene A —> protonated alkene A, alkene B —>protonated alkene B) is more favorable. The energy of proton is given at right. Compare geometries of the two alkenes. Which is more strained Why How is this likely to affect the proton affinity Compare electrostatic potential maps for the two alkenes. Is the n bond in one more susceptable to protonation than that in the other Compare maps for the two protonated forms. Is the charge in one more delocalized than that in the other Suggest an explanation to account for both the reactivity difference and the structural changes. 

A. Tsarbopoulos, M. Karas, K. Strupat, B. N. Pramanlk, T. L. Nagabhushan, and F. Hillen-kamp, Comparative mapping of recombinant proteins and glycoproteins by plasma desorption and matrix-assisted laser desorption/ionization mass-spectrometry, Anal. Chem., 66 (1994) 2062-2070. 

Yu J, Chang PK, Cary JW, Wright M, Bhatnagar D, Cleveland TE, Payne GA, Linz JE Comparative mapping of aflatoxin pathway gene cluster in Aspergillus parasiticus and Aspergillus flams. Appl Environ Microbiol 1995 61 2365-2371. 

Finally, the average value of the surface property of the molecule is assigned to each excited neuron in the comparative map. Two surfaces can be compared with different tolerance depending on the value of the neuron winning distance different MD thresholds result in a series of different maps. The comparative feature maps can be then described by various global descriptors to be used for QSAR modeling. 

Fig. 3. Main window of the software package ANACONDA for two-codon context analysis at the ORFeome comparison level. When more than three ORFeomes are processed by ANACONDA it is possible to build a large-scale comparative map, as shown in the main right panel of the software s window. In this map, each column represents one ORFeome, with one line for all possible combinations of two consecutive codons. Visual comparison of different ORFeomes is possible if all ORFeomes are normalized to a given size and aligned using the same context order.

Akihito Ozawa, Mark R. Band, Joshua H. I arson, Jena Donovan, Cheryl A. Green, James E. Womack, Harris A. Lewin, Comparative organization of cattle chromosome 5 revealed by comparative mapping by annotation and sequence similarity and radiation hybrid mapping. Proceedings of the National Academy of Sciences USA, 97 (2000), 4150-4155. 

Tonellato, P. J., Zho, H., Chen, D., Wang, Z., Stoll, M., Kwitek-Black, A., and Jacob, H. Comparative Mapping of the Human and Rat Genomes with Radiation Hybrid Maps, RECOMB 99, Lyon, France, April 1999. 

Because of (i) some important differences in structure and function of cyt b compared to cyt b (6-C ) [36], (ii) the small degree of inhibitor resistance in the downstream mutations in the mouse cyt b (22), and (iii) the absence of an n-side inhibitor and a comparable map of inhibitor-resistant mutants in cyanobacteria, it was decided to use protease and peptide-directed antibodies to probe the in situ topography of cyt... 

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