Clusters protein vibrational energy

We have explored in this chapter how quantum mechanical energy flow in moderate-sized to large molecules influences kinetics of unimolecular reactions and thermal conduction. In the first part of this chapter we addressed vibrational energy flow in moderate-sized molecules, and we also discussed its influence on kinetics of conformational isomerization. In the second part we examined the dynamics of vibrational energy flow through clusters of water molecules and through proteins, and we computed thermal transport coefficients for these objects. 

In the second part of the chapter, we have examined the spread of vibrational energy through coordinate space in systems that are large on the molecular scale—in particular, clusters of hundreds of water molecules and proteins—and computed thermal transport coefficients for these systems. The coefficient of thermal conductivity is given by the product of the heat capacity per unit volume and the energy diffusion coefficient summed over all vibrational modes. For the water clusters, the frequency-dependent energy diffusion coefficient was... 

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