Cascade Blue fluorophores

Figure 9.37 The basic structure of Cascade Blue fluorophores.

This fluorophore has excitation maxima at 375 and 400 nm and an emission maximum at 410 nm. The small Stoke s shift may create some difficulty in discrete excitation without contaminating the emission measurement with scattered or overlapping light. The extinction coefficient of the molecule in water is about 27,000M 1cm 1. Cascade Blue and Lucifer Yellow derivatives can be simultaneously excited by light of less than 400 nm, resulting in two-color detection at 410 and 530 nm. 

Cascade Blue cadaverine and Cascade Blue ethylenediamine both contain a carboxamide-linked diamine spacer off the 8-methoxy group of the pyrene trisulfonic acid backbone. The cadaverine version contains a 5-carbon spacer, while the ethylenediamine compound has only a 2-carbon arm. Both can be coupled to carboxylic acid-containing molecules using a carbodiimide reaction (Chapter 3, Section 1). Since Cascade Blue derivatives are water-soluble, the carbodiimide EDC can be used to couple these fluorophores to proteins and other carboxylate-containing molecules in aqueous solutions at a pH range of 4.5-7.5. The reaction forms amide bond linkages (Figure 9.39). 

These fluorophores have excitation maxima at 377-378 nm and at 398-399nm and emission maxima at 422-423 nm. The extinction coefficients of the molecules in water are about 27,000 M 1cm 1. The Cascade Blue derivatives can be used along with Lucifer Yellow... 

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