Biological systems, cation-anion

The concentration of salt in physiological systems is on the order of 150 mM, which corresponds to approximately 350 water molecules for each cation-anion pair. Eor this reason, investigations of salt effects in biological systems using detailed atomic models and molecular dynamic simulations become rapidly prohibitive, and mean-field treatments based on continuum electrostatics are advantageous. Such approximations, which were pioneered by Debye and Huckel [11], are valid at moderately low ionic concentration when core-core interactions between the mobile ions can be neglected. Briefly, the spatial density throughout the solvent is assumed to depend only on the local electrostatic poten-... 

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Wurster in 1879 had already prepared crystalline salts containing radical cation 23 (equation 12). Subsequently, radical cations of many different structural types have been found, especially by E. Weitz and S. Hunig, and recently these include a cyclophane structure 24 containing two radical cations (Figure 3). Leonor Michaelis made extensive studies of oxidations in biological systems, " and reported in 1931 the formation of the radical cation species 25, which he designated as a semiquinone. Michaelis also studied the oxidation of quinones, and demonstrated the formation of semiquinone radical anions such as 26 (equation 13). Dimroth established quantitative linear free energy correlations of the effects of oxidants on the rates of formation of these species. ... 

Despite the prominence of anion recognition chemistry in biological systems, the design of supramolecular anion receptors was slow to develop with respect to the analogous chemistry of cations, and this discrepancy may readily be traced to a number of inherent difficulties in anion binding ... 

A similar situation is found in the structure of putrescine diphosphate " (a model system for amine-nucleic acid interactions) which divides into layers of HjPOJ anions bridged by protonated putrescine (1,4-diamino-n-butane) cations. In a real biological system (yeast phenylalanine transfer RNA) phosphate residues are found to be enveloped by the polyamine spermine [NH2(CH2)jNH(CH2)4NH(CH2)jNH2] which again adopts a linear, nonchelating conformation. ... 

Since the discovery in 1964 that the antibiotic valinomydn exhibited alkali cation specificity in rat liver mitochondria, a new area of research has developed, based not only on biological systems but also on model systems such as crown ethers.484 The ability of neutral compounds to form lipid-soluble alkali and alkaline earth complexes was observed in 1951. The structure of the corresponding ligand, the anion of the antibiotic nigericin (78), was characterized as its silver salt in 1968.488 486 Silver was used as a heavy atom crystaUographically, since the Ag+ cation had a radius between that of Na+ and K+, which were the two alkali cations with which nigericin was most active. 

Explain why tetrapyrrole macrocycles feature highly as cation binding hosts in biological systems (Chapter 2) while expanded porphyrins such as (4.14) are more suited to anion binding. 

Many of the compounds we discuss in this chapter will be salts under biological conditions. Most carboxylic acids will exist as anions, as will the phosphates you have just seen, and most amines as cations as they would be protonated at pH 7. Amino acids exist in biological systems as zwitterions. For simplicity, we will usually draw functional groups in the simplest and most familiar way, leaving the question of protonation to be addressed separately if required. 

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