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Chromatin atomic force microscopy

Figure 4. Visualization of PARP-1-mediated chromatin compaction by atomic force microscopy. Chromatin assembled in vitro on a circular 10.5kb plasmid DNA was purified, incubated widi or without recombinant human PARP-1, and imaged by atomic force microscopy. Two types of images are shown scan probe oscillation amplitude (top) and topography (bottom height scale is indicated). The length scale is indicated. (See Colour Plate 6.)... Figure 4. Visualization of PARP-1-mediated chromatin compaction by atomic force microscopy. Chromatin assembled in vitro on a circular 10.5kb plasmid DNA was purified, incubated widi or without recombinant human PARP-1, and imaged by atomic force microscopy. Two types of images are shown scan probe oscillation amplitude (top) and topography (bottom height scale is indicated). The length scale is indicated. (See Colour Plate 6.)...
Hizume K, Yoshimura SH, Maruyama H, Kim J, Wada H, Takeyasu K (2002) Chromatin reconstitution development of a salt-dialysis method monitored by nano-technology. Arch Histol Cytol 65 405 13 Hizume K, Yoshimura SH, Takeyasu K (2004) Atomic force microscopy demonstrates a critical role of DNA superhelicity in nucleosome dynamics. Cell Biochem Biophys 40 249—262 Hizume K, Yoshimura SH, Takeyasu K (2005) Linker histone HI per se can induce three-dimensional folding of chromatin fiber. Biochemistry 44 12978-12989 Hofmann WA, de Lanerolle P (2006) Nuclear actin to polymerize or not to polymerize. J Cell Biol 172 495-496... [Pg.25]

Sato MH, Ura K, Hohmura KI, Tokuimsu F, Yoshimura SH, Hanaoka F, Takeyasu K (1999) Atomic force microscopy sees nucleosome positioning and histone Hl-induced compaction in reconstituted chromatin. FEES Lett 452 267—271... [Pg.28]

Simpson RT, Thoma F, Brubaker JM (1985) Chromatin reconstituted from tandemly repeated cloned DNA fragments and core histones a model system for study of higher order structure. Cell 42 799-808 Sugiyama S, Yoshino T, Kanahara H, Kobori T, Ohtani T (2003) Atomic force microscopic imaging of 30 nm chromatin fiber from partially relaxed plant chromosomes. Scanning 25 132-136 Sugiyama S, Yoshino T, Kanahara H, Shichiri M, Fukushi D, Ohtani T (2004) Effects of acetic acid treatment on plant chromosome structures analyzed by atomic force microscopy. Anal Biochem 324 39 4... [Pg.28]

Lohr, D., Bash, R., Wang, H., Yodh, J., and Lindsay, S. 2007. Using atomic force microscopy to study chromatin structure and nucleosome remodeling. Methods 41,333-341. [Pg.368]


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