Aldolases types

There are two distinct groups of aldolases. Type I aldolases, found in higher plants and animals, require no metal cofactor and catalyze aldol addition via Schiff base formation between the lysiae S-amino group of the enzyme and a carbonyl group of the substrate. Class II aldolases are found primarily ia microorganisms and utilize a divalent ziac to activate the electrophilic component of the reaction. The most studied aldolases are fmctose-1,6-diphosphate (FDP) enzymes from rabbit muscle, rabbit muscle adolase (RAMA), and a Zn " -containing aldolase from E. coli. In vivo these enzymes catalyze the reversible reaction of D-glyceraldehyde-3-phosphate [591-57-1] (G-3-P) and dihydroxyacetone phosphate [57-04-5] (DHAP). 

On the basis of a catalytic system previously developed by the same group, Nicholls and collaborators [51] reported the preparation of an imprinted polymer for enantioselective formation of a C-C bond with properties of a metallo-enzyme aldolase type II. Polymers were imprinted using the two enantiomers of a 1,3-diketone, the (l.S, 35,45)-(75), and the corresponding (l/ ,3/ ,4/ )-(75), together with two 4-vinyl-pyridine held in place by a Co(II). The cross-aldol condensation... 

In 2008 Resmini et al. [76] presented their work on the synthesis of novel molecularly imprinted nanogels with Aldolase type I activity in the cross-aldol reaction between 4-nitrobenzaldehyde and acetone. A polymerisable proline derivative was used as the functional monomer to mimic the enamine-based mechanism of aldolase type I enzymes. A 1,3-diketone template, used to create the cavity, was... 

Serine hydroxymethyltransferase is a PLP-dependent aldolase. It catalyzes interconversion between glycine and various P-hydroxy-a-amino acids, such as serine and threonine, via formation of a quinoid intermediate derived from PLP with the amino acid substrate (Scheme 2.9). This aldolase-type reaction is of interest as an asymmetric synthesis of a-amino acids via C-C bond formation. 

Kuzuhara et al. synthesized an optically resolved pyridoxal analog having an ansa chain" between the 2 - and 5 -positions (45) [46]. The aldolase-type reaction of 45 and glycine with either acetaldehyde or propionaldehyde afforded the corresponding P-hy-droxy-a-amino acid with 27-77% ee. The erythro isomers were 1.2-1.8 times dominant over threo ones. The (S) -enantiomer of the pyridoxal derivative furnished the (S)-amino acid in excess. Accordingly, the reaction occurred on the same face as was occupied by the ansa chain. We have confirmed these results [47]. 

Murakami et al. have utilized Mayer vesides to study aldolase-type reactions [48]. Formation of [i-phenylserinc from glydne and benzaldehyde proceeded effectively by cooperative catalysis of a hydrophobic pyridoxal derivative (47) and Zn(n) ions in the bilayer vesicle formed with 32. The threo isomer was dominantly produced over the erythro form. A marked enantioselectivity was observed in the co-veside of 32 and 35 in combination with 47 and Cu(ii) the ee for formation of (2S,3R)-P-phcnylscrinc over its enantiomeric (2R,3S)-isomer was 58%. Enantioselectivity also arose with another bilayer assembly, formed with 32, 35, and 37 in the presence of Cu(ii), where the (2R,3S) isomer was dominant over the (2S,3R) species in 13% ee. The opposite enantioselectivity performed by the second system, as compared with that for 47, might reflect a different stereochemical environment around the quinoid intermediate that allows the attack of benzaldehyde. 

Vitamin B6 enzyme models that can catalyze five types of reactions - transamination, racemization, decarboxylation, P-elimination and replacement, and aldolase-type reactions - have been reviewed. There are also five approaches to construct the vitamin B6 enzyme models (i) vitamin B6 augmented with basic or chiral auxiliary functional groups (ii) vitamin B6 having an artificial binding site (iii) vitamin B6-surfactant systems (iv) vitamin B6-polypeptide systems (v) polymeric and dendrimeric vitamin B6 systems. These model systems show rate enhancement and some selectivity in vitamin B6-dependent reactions, but they are still primitive compared with the real enzymes. We expect to see improved reaction rates and selectivities in future generations of vitamin B6 enzyme models. An additional goal, which has not received ade-... 

Aldolase-type biocatalysts can generally also be expected to catalyze the enolization of the ketone donor. However, directly detecting enolization by fluorescence is not possible. It was recently found that dihydroxyacetone coumarin ether 14 functions... 

The originally proposed stereochemical model by Hajos and Parrish" was rejected by M.E. Jung and A. Eschenmoser. They proposed a one-proline aldolase-type mechanism involving a side chain enamine. The most widely accepted transition state model to account for the observed stereochemistry was proposed by C. Agami et al. suggesting the involvement of two (S)-(-)-proline molecules. " " Recently, K.N. Houk and co-workers reexamined the mechanism of the intra- and intermolecular (S)-(-)-proline catalyzed aldol reactions. Their theoretical studies, kinetic, stereochemical and dilution experiments support a one-proline mechanism where the reaction goes through a six-membered chairlike transition state. 

Aldolases accept a wide range of aldehydes in place of their natural substrates and permit the synthesis of carbohydrates such as azasugars, deoxy sugars, deoxythio sugars, fluoro-sugars, and C8 or C9 sugars. In the case of D-fructose-1,6-diphosphate aldolase (FDP aldolase, Type A), more than 75 aldehydes have been identified as substrates [143]. 

In nature, aldol reaction is catalyzed by two different classes of aldolases type I aldolases catalyze the reaction via enamine formation while with type II aldolases the reaction involves a zinc(II) ion [5] (Figure 5.2). 

Aldolases constitute attractive tools in the asymmetric construction of molecular frameworks as well as in the synthesis of chiral bioactive compoxmds, such as carbohydrates, amino acids, and their analogues. Indeed, molecular complexity through enz3unatic C—C cormection can be built up xmder mild conditions, without a need for iterative steps of protection and deprotection of sensitive or reactive functional groups, increasing the atom economy of the transformation. Moreover, the same or different aldolase types can be applied independently in consecutive... 

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