Big Chemical Encyclopedia

Chemical substances, components, reactions, process design ...

Articles Figures Tables About

3D-PSSM

LA Kelley, RM MacCallum, MJE Sternberg. Enhanced genome annotation using structural profiles in the program 3D-PSSM. J Mol Biol 299 501-522, 2000. [Pg.493]

The 3D-PSSM (Kelley et ah, 2000) server at http //www.bmm.icnet.uk/ 3dpssm/ offers online protein fold recognition. On the submission form, enter your e-mail address and a one-line description of the query protein, then paste the query sequence into the sequence box and click the Submit button. The query sequence is used to search the Fold library for homologues. You will be informed of the URL where the result is located for 4 days. The output includes a summary table (hits with statistics models that can be viewed with RasMol classifications and links) and fold recognition by 3D-PSSM with a printout as exemplified in Figure 12.13. The alignment displays consensus sequence, secondary structures (C for coil, E for extended, and H for helix), and core score (0 for exterior to 9 for interior core). [Pg.254]

Overview of the 3D-PSSM approach for protein structure prediction For any protein (superfamily) PSI-BLAST searches and profiles are computed and using the structural superposition of the (structurally related) family members. On the basis of... [Pg.275]

Bates, R A., L. A. Kelley, R. M. MacCallum, and M. J. Sternberg. 2001. Enhancement of protein modeling by human intervention in applying the automatic programs 3D-JIGSAW and 3D-PSSM. Proteins S5 39-46. [Pg.80]

Kelley, L.A., MacCallum, R.M. and Sternberg, M.J. (2CXX)) Enhanced genome aruiotation using stmctural profiles in the program 3D-PSSM. J. Mol. Biol. 299 499-520. [Pg.457]

D-PSSM http //www.bmm.icnet.uk/ 3dpssm/ Fold recognition 1... [Pg.626]

Enhanced Genome Annotation using Structural Profiles in the Program 3D-PSSM. [Pg.163]

See other pages where 3D-PSSM is mentioned: [Pg.475]    [Pg.477]    [Pg.242]    [Pg.256]    [Pg.256]    [Pg.351]    [Pg.275]    [Pg.276]    [Pg.295]    [Pg.321]    [Pg.265]    [Pg.268]    [Pg.66]    [Pg.623]    [Pg.626]    [Pg.653]    [Pg.113]    [Pg.119]    [Pg.163]    [Pg.164]   
See also in sourсe #XX -- [ Pg.260 , Pg.280 ]

See also in sourсe #XX -- [ Pg.113 , Pg.119 ]



SEARCH



PSSM

© 2024 chempedia.info