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Sphere coloring

Scheme 35 Various steps observed during the hydrogenolysis of SnBu4 at the surface of a Pt particle (sphere color-code Pt brown, H blue, C white, Sn green)... Scheme 35 Various steps observed during the hydrogenolysis of SnBu4 at the surface of a Pt particle (sphere color-code Pt brown, H blue, C white, Sn green)...
Figure 2.14 Schematic representation of the various stages of the grafting of a surface organo-tin complex on a platinum particle (as demonstrated by EXAFS, NMR, chemical analysis, IR). From left to right starting platinum particle with the surface organometallic fragment [(Pts)3(Tl -snBu]i adatoms of Sn, [(Pt4(ri -Sn]) surface PtSn alloy [sphere color-code orange (Pt), blue (H), white (C), green (Sn)]. Figure 2.14 Schematic representation of the various stages of the grafting of a surface organo-tin complex on a platinum particle (as demonstrated by EXAFS, NMR, chemical analysis, IR). From left to right starting platinum particle with the surface organometallic fragment [(Pts)3(Tl -snBu]i adatoms of Sn, [(Pt4(ri -Sn]) surface PtSn alloy [sphere color-code orange (Pt), blue (H), white (C), green (Sn)].
Ugands When present, ligands., msttli, whohydrite. water, etc- t hetaro acems l are spheres colored to identify the elemtnti ... [Pg.214]

Fig. 12 Our previous superimposition of U-50488H (arylacetamide) on TRK-820 (morphinan) [16]. TRK-820 is shown in green, and U-50488H is shown in white. Sphere colors indicate the following properties (see Sect. 4.3) hydrophobic (HP, white) aromatic (AR, green) hydrogen-bond donors (HD, blue) hydrogen-bond acceptors (HA, red) and hydrogen-bond donors/acceptor (DA, violet). Large and small spheres represent radii of 1 and 0.5 A, respectively. The TRK-820 and U-50488H spheres are represented by dotted and solid spheres, respectively. Only matched spheres are indicated... Fig. 12 Our previous superimposition of U-50488H (arylacetamide) on TRK-820 (morphinan) [16]. TRK-820 is shown in green, and U-50488H is shown in white. Sphere colors indicate the following properties (see Sect. 4.3) hydrophobic (HP, white) aromatic (AR, green) hydrogen-bond donors (HD, blue) hydrogen-bond acceptors (HA, red) and hydrogen-bond donors/acceptor (DA, violet). Large and small spheres represent radii of 1 and 0.5 A, respectively. The TRK-820 and U-50488H spheres are represented by dotted and solid spheres, respectively. Only matched spheres are indicated...
Figure 24 (Left) Cartoon representation of the Bacillus subtilis GPATase monomer (1AOO) showing the domain structure and the location of the [4Fe-4S] cluster (spheres). Coloring S - yellow and Fe - red. (Right) Cartoon representation of the Escherichia coli GPATase monomer (1ECF). The glutaminase and synthase domains in both images are colored orange and... Figure 24 (Left) Cartoon representation of the Bacillus subtilis GPATase monomer (1AOO) showing the domain structure and the location of the [4Fe-4S] cluster (spheres). Coloring S - yellow and Fe - red. (Right) Cartoon representation of the Escherichia coli GPATase monomer (1ECF). The glutaminase and synthase domains in both images are colored orange and...
Scheme 74 Major pathway of the reaotion of MesSnR with the surfaoe of R particles under H2 (sphere color code orange (R),... Scheme 74 Major pathway of the reaotion of MesSnR with the surfaoe of R particles under H2 (sphere color code orange (R),...
Fig. 6.3 The structural basis of thermostability in CYPl 19. An unusually large network of aromatic residues (here shown in space filling spheres, colored by structural element) has been suggested to contribute to thermostability ofS. solfataricus CYP119A1 (PDB 1F4U) [92]... Fig. 6.3 The structural basis of thermostability in CYPl 19. An unusually large network of aromatic residues (here shown in space filling spheres, colored by structural element) has been suggested to contribute to thermostability ofS. solfataricus CYP119A1 (PDB 1F4U) [92]...
Sphere coloring, an important recent feature in DOCK, allows the user to specify the kind of properties desired for a particular sphere—for example, a hydrogen bond acceptor. This aid greatly improves the efficiency of the docking process because the vast majority of possible alignments can be discarded when it is observed that properties of the ligand atoms do not... [Pg.15]

See other pages where Sphere coloring is mentioned: [Pg.65]    [Pg.92]    [Pg.203]    [Pg.296]    [Pg.86]    [Pg.372]    [Pg.186]    [Pg.372]    [Pg.16]    [Pg.1233]    [Pg.88]    [Pg.88]    [Pg.89]    [Pg.92]    [Pg.375]    [Pg.375]    [Pg.376]   
See also in sourсe #XX -- [ Pg.296 ]

See also in sourсe #XX -- [ Pg.296 ]

See also in sourсe #XX -- [ Pg.15 ]



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