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Soft docking

DARWIN EUDOC FTDOCK LIGIN PRO LEADS Soft docking... [Pg.40]

BiGGER A New (Soft) Docking Algorithm for Predicting Protein Interactions. [Pg.95]

Soft receptors are an easy and efficient way to model a certain degree of protein flexibility. Their major disadvantage is certainly a substantial lack of accuracy. Usually, soft docking is the initial step of an induced fit workflow before a complex refinement occurs. [Pg.232]

Jiang, E. and Kim, S. (1991) Soft docking matching of molecular surface cubes. Journal of Molecular Biology,... [Pg.242]

The soft docking model represents the target and docking molecules as a collection of cubes rather than spheres. This method combines aspects of surface complementarity, grid search, and soft potential modeling. The cubic representation along with a grid search makes the translational and rotational searches much more efficient. In addition, the cubes implicitly allow for some volume overlap, which can be used in combination with surface complementarity to screen docked complexes [208]. [Pg.411]

Jiang and Kim 1991 SOFT DOCK surface cubes geometric filter interact NR NR... [Pg.1607]

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See also in sourсe #XX -- [ Pg.232 ]



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