Reaction coordinates transition path ensemble

The path ensemble, as created by the transition path sampling methodology, is a statistically representative collection of trajectories leading from a reactant region to a product region. Further analysis of this ensemble of pathways is necessary to obtain rate constants, reaction mechanisms, reaction coordinates, transition state structures etc. In this section we will describe how to analyze the path ensemble by determining transition state ensembles, and how to test proposed reaction coordinates using committor distributions. 

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