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Protein structure alignment programs

Three-Dimensional Considerations Discrimination of common protein folds application of protein structure to sequence/structure comparisons, 266, 575 three-dimensional profiles for measuring comparability of amino acid sequence with three-dimensional structure, 266, 598 SSAP sequential structure alignment program for protein structure comparison, 266, 617 understanding protein structure using scop for fold interpretation, 266,... [Pg.436]

Orengo, C. A. and W. R. Taylor, SSAP sequential structure alignment program for protein structure comparison. Methods Enzymol, 1996. 266 p. 617-35. [Pg.316]

Table 5 Websites for Publicly Available Protein Structure Alignment Services and Programs... Table 5 Websites for Publicly Available Protein Structure Alignment Services and Programs...
One widely used modem method is PHD." The program incorporates evolutionary information, in the form of mnltiple sequence alignments, to develop a neural network method that predicts secondary stmcture with an accuracy >70%. Knowledge of neural networks is not necessary for the practical user of this method, and the methodology is not discussed in detail here. Instead, the interested reader shonld consult reviews of the use of neural networks in protein structure prediction. ... [Pg.130]

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