Big Chemical Encyclopedia

Chemical substances, components, reactions, process design ...

Articles Figures Tables About

PredictProtein

PhD, TOPITS http //www.embl-heidelberg.de/predictprotein/predictprotein.html... [Pg.278]

Site address http//www.embl-heidelberg.de/Services/sander/predictprotein/... [Pg.512]

PredictProtein http //cubic.bioc.columbia.edu/predictprotein/... [Pg.236]

The method of Rost and Sander (Rost and Sander, 1993), which combines neural networks with multiple sequence alignments known as PHD, is available from the PredictProtein (Rost, 1996) server of Columbia University (http //cubic.bioc. columbia.edu/predictprotein/). This Web site offers the comprehensive protein sequence analysis and structure prediction (Figure 12.8). For the secondary structure prediction, choose Submit a protein sequence for prediction to open the submission form. Enter e-mail address, paste the sequence, choose options, and then click the... [Pg.249]

Figure 12.9. Protein structure prediction with PHD. The amino acid sequence of chicken lysozyme precursor (147 amino acids) is submitted to PredictProtein server for PHD structure predictions. The returned e-mail reports protein class based on secondary structures, predicted secondary structure composition (%H, %E, and %L), residue composition, data interpretation, and predicted data in two levels (brief and normal of which the normal is shown). Search for the database can be performed by making choice(s) from the list(s) of pop-up box(es). Figure 12.9. Protein structure prediction with PHD. The amino acid sequence of chicken lysozyme precursor (147 amino acids) is submitted to PredictProtein server for PHD structure predictions. The returned e-mail reports protein class based on secondary structures, predicted secondary structure composition (%H, %E, and %L), residue composition, data interpretation, and predicted data in two levels (brief and normal of which the normal is shown). Search for the database can be performed by making choice(s) from the list(s) of pop-up box(es).
PredictProtein Protein structure analysis Automatic sequence alignment, protein fold recognition, and secondary structure prediction web server 177 www.embl-heidelberg.de/predictprotein/... [Pg.444]

PredictProtein http //www.predictprotein.org/ Protein structure predictions... [Pg.21]

RostB,YachdavG,Liu J (2004)The PredictProtein server. Nucleic Adds Res 32 W321-W326... [Pg.33]

PREDICTPROTEIN GPCRdb 7TM snake plots Protein 3D Structure Analysis... [Pg.111]

Rost, B., G. Yachdav, and J. Liu. 2004. The PredictProtein server. Nucleic Acids Res 32, Web Server Issue W321-6. [Pg.284]

From phd dodo.cpmc.columbia.edu (PredictProtein) To scienceguyl aol.com... [Pg.8]

Figure 1.2. Anatomy of an E-mail message, with relevant components indicated. This message is an automated reply to a request for help file for the PredictProtein E-mail server. Figure 1.2. Anatomy of an E-mail message, with relevant components indicated. This message is an automated reply to a request for help file for the PredictProtein E-mail server.
Sequences are submitted to PredictProtein either by sending an E-mail message or by using a Web front end. Several options are available for sequence submission the query sequences can be submitted as single-letter amino acid code or by its SWISS-PROT identifier. In addition, a multiple sequence alignment in PASTA format or as a PIR alignment can also be submitted for secondary structure prediction. [Pg.265]

The input message, sent to predictprotein embl-heidelberg.de, takes the following form ... [Pg.265]

See other pages where PredictProtein is mentioned: [Pg.8]    [Pg.10]    [Pg.512]    [Pg.462]    [Pg.227]    [Pg.235]    [Pg.236]    [Pg.242]    [Pg.242]    [Pg.251]    [Pg.254]    [Pg.350]    [Pg.350]    [Pg.351]    [Pg.351]    [Pg.470]    [Pg.22]    [Pg.294]    [Pg.294]    [Pg.111]    [Pg.270]    [Pg.116]    [Pg.141]    [Pg.8]    [Pg.8]    [Pg.265]    [Pg.265]    [Pg.266]    [Pg.266]   
See also in sourсe #XX -- [ Pg.6 , Pg.8 ]

See also in sourсe #XX -- [ Pg.512 ]

See also in sourсe #XX -- [ Pg.265 , Pg.266 , Pg.269 ]



SEARCH



PredictProtein server

© 2024 chempedia.info