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Multiple sequence alignment generation

Figure 12.10. Query page of Jpred. Jpred aligns the input single sequence or unaligned multiple sequences to generate PSIBLAST profile and uses the profile for Jnetto produce prediction. Alternatively, the aligned multiple sequences can be supplied for Jnet prediction. Figure 12.10. Query page of Jpred. Jpred aligns the input single sequence or unaligned multiple sequences to generate PSIBLAST profile and uses the profile for Jnetto produce prediction. Alternatively, the aligned multiple sequences can be supplied for Jnet prediction.
Figure 17-2 A comparison of consensus amino acid sequences of serine/threonine protein phosphatases with bacteriophage A protein phosphatase. Consensus sequences within the phosphoesterase domain [23-25] of calcineurin, PPl, and PP2A were generated from multiple sequence alignments for each member. The standard amino acid codes are used. The letter X refers to a residue that is not conserved within the consensus sequence for each member while spaces represent introduced gaps. Letters noted in bold represent ligands to the metal ions of the dinuclear metal center (see Figure 17-3). Figure 17-2 A comparison of consensus amino acid sequences of serine/threonine protein phosphatases with bacteriophage A protein phosphatase. Consensus sequences within the phosphoesterase domain [23-25] of calcineurin, PPl, and PP2A were generated from multiple sequence alignments for each member. The standard amino acid codes are used. The letter X refers to a residue that is not conserved within the consensus sequence for each member while spaces represent introduced gaps. Letters noted in bold represent ligands to the metal ions of the dinuclear metal center (see Figure 17-3).
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Aligned sequence

Multiple alignment

Sequence alignment

Sequence alignment multiple

Sequencing alignment

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