Molecules handedness

Tanaka, A., Hisaki, I., Tohnai, N. and Miyata, M. (2007) Supramolecular tilt-chirality derived from symmetric benzene molecules handedness of the 2 helical assembly. Chem. Asian J., 2, 230-238. 

There are many other examples of interrelationship. Symmetry, for example, is of fundamental importance in the sciences and arts alike. It plays a key role in our understanding of the atomic world as well as the cosmos. The handedness of molecules, with nature selecting one... 

Mixtures containing equal quantities of enantiomers are called racemic mixtures Racemic mixtures are optically inactive Conversely when one enantiomer is present m excess a net rotation of the plane of polarization is observed At the limit where all the molecules are of the same handedness we say the substance is optically pure Optical purity or percent enantiomeric excess is defined as... 

Handedness is also important in organic and biological chemistry, where it arises primarily as a consequence of the tetrahedral stereochemistry of 5p3-hybridized carbon atoms. Many drugs and almost all the molecules in our bodies, for instance, are handed. Furthermore, it is molecular handedness that makes possible the specific interactions between enzymes and their substrates that are so crucial to enzyme function. We ll look at handedness and its consequences in this chapter. 

Achiral (Section 9.2) Having a lack of handedness. A molecule is achiral if it has a plane of symmetry and is thus superimposable on its mirror image. 

Chiral (Section 9.2) Having handedness. Chiral molecules are those that do not have a plane of symmetry and are therefore not superimposable on their mirror image. A chiral molecule thus exists in two forms, one right-handed and one left-handed. The most common cause of chirality in a molecule is the presence of a carbon atom that is bonded to four different substituents. 

If a molecule is nonsuperimposable on its miixor image, the mirror image must be a different molecule, since superimposability is the same as identity. In each case of optical activity of a pure compound there are two and only two isomers, called enantiomers (sometimes enantiomorphs), which differ in structure only in the left-and right-handedness of their orientations (Fig. 4.1). Enantiomers have identical physical and chemical properties except in two important respects ... 

Don t confuse conformation with configuration. Students confuse these terms all of the time. Conformations are the different positions that a molecule can twist into, but configuration is a matter of right-handedness or left-handedness (R or S). 

Ever since Pasteur s work with enantiomers of sodium ammonium tartrate, the interaction of polarized light has provided a powerful, physical probe of molecular chirality [18]. What we may consider to be conventional circular dichroism (CD) arises from the different absorption of left- and right-circularly polarized light by target molecules of a specific handedness [19, 20]. However, absorption measurements made with randomly oriented samples provide a dichroism difference signal that is typically rather small. The chirally induced asymmetry or dichroism can be expressed as a Kuhn g-factor [21] defined as ... 

The effect of the symmetry operations on the Cartesian displacement coordinates of the two hydrogen atoms in die water molecule. The sharp ( ) indicates the inversion of a coordinate axis, resulting in a change in handedness of the Cartesian coordinate system. 

The influence of the weak interaction on chemical reactions can be calculated since it favours left-handedness, it has an effect on the energy content of molecules and thus on their stability. In the case of the amino acids, the L-form would be more stable than the corresponding D-form to a very small extent. Theoretical calculations (using ab initio methods), in particular by Mason and Tranter (1983), indicated that the energy difference between two enantiomers due to the parity violation is close to 10 14J/mol (Buschmann et al., 2000). More recent evidence suggests that the... 

Evidence on the mechanism of reactions can also come from examining the exact molecular geometry of the overall process, its stereochemistry. For example, if a reactant with defined handedness (chirality) is converted to a product that is an equal mixture of the left- and right-handed forms, the loss of handedness indicates that a particular geometry must have been involved along the path. If a right-handed molecule is converted only to a left-handed product, we say that an inversion of configuration has occurred, and this also tells us a lot about how the reaction occurred. 

Chemists are also interested in developing reactions that produce new asymmetric centers within molecules. There is significant interest in the development of new catalysts that produce centers of asymmetry, or handedness, within molecules that have no preferred handedness to start. Simple chiral molecules generated by these asymmetric catalysts are important building blocks for new medicines and research tools. 

So far we have considered the formation of tubules in systems of fixed molecular chirality. It is also possible that tubules might form out of membranes that undergo a chiral symmetry-breaking transition, in which they spontaneously break reflection symmetry and select a handedness, even if they are composed of achiral molecules. This symmetry breaking has been seen in bent-core liquid crystals which spontaneously form a liquid conglomerate composed of macroscopic chiral domains of either handedness.194 This topic is extensively discussed in Walba s chapter elsewhere in this volume. Some indications of this effect have also been seen in experiments on self-assembled aggregates.195,196... 

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