Molecular dynamics electrostatic potential

Optimized potentials for liquid simulation (OPES) was designed for modeling bulk liquids. It has also seen significant use in modeling the molecular dynamics of biomolecules. OPLS uses five valence terms, one of which is an electrostatic term, but no cross terms. 

Once you have calculated an ab initio or a semi-empirical wave function via a single point calculation, geometry optimization, molecular dynamics or vibrations, you can plot the electrostatic potential surrounding the molecule, the total electronic density, the spin density, one or more molecular orbitals /i, and the electron densities of individual orbitals You can examine orbital energies and select orbitals for plotting from an orbital energy level diagram. 

RB Yelle, N-S Park, T Ichiye. Molecular dynamics simulations of rubredoxm from Clostridium pasteurianum Changes m structure and electrostatic potential during redox reactions. Proteins 22 154-167, 1995. 

We can distinguish between static theories, which in essence give a description of the electron density, and dynamic theories, where an attempt is marie to measure the response of a molecule to (e.g.) an approaching N02" " ion. In recent years, the electrostatic potential has been used to give a simple representation of the more important features of molecular reactivity. It can be calculated quite easily at points in space ... 

When the MM subsystem is being optimized, or a molecular dynamics simulation is being carried out on the MM subsystem, the QM/MM electrostatic interactions are approximated with fixed point charges on the QM atoms which are fitted to reproduce the electrostatic potential (ESP) of the QM subsystem [37],... 

Keffer DJ, Mintmire JW (2000) Efficient parallel algorithms for molecular dynamics simulations using variable charge transfer electrostatic potentials. Int J Quant Chem 80(4-5) 733-742... 

To make an accurate FEP calculation, a good description of the system is required. This means that the parameters for the chosen force field must reproduce the dynamic behaviour of both species correctly. A realistic description of the environment, e.g. size of water box, and the treatment of the solute-solvent interaction energy is also required. The majority of the parameters can usually be taken from the standard atom types of a force field. The electrostatic description of the species at both ends of the perturbation is, however, the key to a good simulation of many systems. This is also the part that usually requires tailoring to the system of interest. Most force fields require atom centered charges obtained by fitting to the molecular electrostatic potential (MEP), usually over the van der Waals surface. Most authors in the studies discussed above used RHF/6-31G or higher methods to obtain the MEP. 

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