JPred server

The prediction of the secondary structures can be made by the structure similarity search of PDB collection at the site. Several servers provide such prediction method. The Jpred, which aligns the query sequence against PDB library, can be accessed at http //jura.ebi.ac.uk 8888/index.html. To predict the secondary structures, however, check Bypass the current Brookhaven Protein Database box and then click Run Secondary Structure Prediction on the home page of Jped to open the query page (Figure 12.10). Upload the sequence file via browser or paste the query sequence into the sequence box. Enter your e-mail address (optional) and click the Run Secondary Structure Prediction button. The results with the consensus structures are returned either online (linked file) or via e-mail (if e-mail address is entered). 

JPRED Secondary structure prediction and sequence alignment web server 170 www.compbio.dundee.ac.uk/ www-jpred/... 

Cuff JA, Clamp ME, Siddiqui AS, et al. JPred a consensus secondary structure prediction server. Bioinformatics 1998 14 892-893. 

---