3- indoles, used conformational analysis

The three aromatic amino acids (Phe, Tyr, Trp) have side-chain groups corresponding to the benzene, phenol, and indole chromophores, respectively. The spectroscopic properties of the rat transitions in these chromophores have been reviewed.136-381 Coupling of aromatic transitions among themselves and with peptide transitions can give rise to CD bands in the near and far (k < 250 nm) UV. Near-UV CD bands are useful indicators of the environment of the aromatic chromophores and can frequently be assigned to specific types of side chain, based upon band position, presence of vibrational fine structure, etc. Far-UV CD bands due to aromatic side chains, except for the La band of Tyr (-230 nm) and the Bb band of Trp (-225 nm), are generally difficult to resolve from peptide CD bands and can complicate the conformational analysis of peptides. 

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