Group transfer, nucleophilic

Equation (5-69) is an important result. It was first obtained by Marcus " in the context of electron-transfer reactions. Marcus derivation is completely different from the one given here. In electron transfer from one molecule (or ion) to another, no bonds are broken or formed, so the transition state theory does not seem to be applicable. Marcus assumed negligible orbital overlap in the electron-transfer transition state, but he later obtained the same equation for group transfer reactions requiring significant overlap. Many applications have been made to proton transfers and nucleophilic displacements. ... 

This is the reverse of the first step in the SnI mechanism. As written here, this reaction is called cation-anion recombination, or an electrophile-nucleophile reaction. This type of reaction lacks the symmetry of a group transfer reaction, and we should therefore not expect Marcus theory to be applicable, as Ritchie et al. have emphasized. Nevertheless, the electrophile-nucleophile reaction possesses the simplifying feature that bond formation occurs in the absence of bond cleavage. 

There has been much recent interest in the role of zinc in activating cysteine residues to nucleophilic attack.542-545 Alkyl group transfer to coordinated cysteine residues occurs in a number of zinc proteins, such as Ada (the E. coli DNA repair protein) and the cobala-... 

Full details on the phosphorylation of water and alcohols by 4-nitrophenyl dihydrogen phosphate and the NfC H ) - and N(CH3) -salts of its mono- and dianion have been published 146>. Phosphoryl group transfer from the monoanion and dianion is thought to proceed via the monomeric POf ion. Addition of the sterically unhindered amine quinuclidine to an acetonitrile solution containing the phosphate monoanion and tert-butanol produces t-butyl phosphate at a faster rate than does the addition of the more hindered diisopropylethylamine. This nucleophilic catalysis of the phosphorylation reaction is also explained by the intermediacy of the POf ion. 

The controlled polymerization of (meth)acrylates was achieved by anionic polymerization. However, special bulky initiators and very low temperatures (- 78 °C) must be employed in order to avoid side reactions. An alternative procedure for achieving the same results by conducting the polymerization at room temperature was proposed by Webster and Sogah [84], The technique, called group transfer polymerization, involves a catalyzed silicon-mediated sequential Michael addition of a, /f-unsaluralcd esters using silyl ketene acetals as initiators. Nucleophilic (anionic) or Lewis acid catalysts are necessary for the polymerization. Nucleophilic catalysts activate the initiator and are usually employed for the polymerization of methacrylates, whereas Lewis acids activate the monomer and are more suitable for the polymerization of acrylates [85,86]. 

Figure 5.6 Nucleophilic displacement reactions involving glycosyl (A), acyl (B) or phosphoryl (C) group transfers.

Group-transfer polymerizations make use of a silicon-mediated Michael addition reaction. They allow the synthesis of isolatable, well-characterized living polymers whose reactive end groups can be converted into other functional groups. It allows the polymerization of alpha, beta-unsaturated esters, ketones, amides, or nitriles through the use of silyl ketenes in the presence of suitable nucleophilic catalysts such as soluble Lewis acids, fluorides, cyanides, azides, and bifluorides, HF. ... 

Group transfer polymerization (GTP) requires either a nucleophilic or Lewis acid catalyst. Bifluoride (HF2) and fluoride ions, supplied by soluble reagents such as tris(dimethylamino)-sulfonium bifluoride, [(CH3)2N]3SHF2, and (w-C NF, are the most effective nucleophilic catalysts, although other nucleophiles (CN , acetate, p-nitrophenolate) are also useful. Zinc... 

The above model has been further explored to account for reaction efficiencies in terms of a scheme where nucleophilicities and leaving group abilities can be rationalized by a structure-reactivity pattern. Pellerite and Brau-man (1980, 1983) have proposed that the central energy barrier for an exothermic reaction (see Fig. 3) can be analysed in terms of a thermodynamic driving force, due to the exothermicity of the reaction, and an intrinsic energy barrier. The separation between these two components has been carried out by extending to SN2 reactions the theory developed by Marcus for electron transfer reactions in solutions (Marcus, 1964). While the validity of the Marcus theory to atom and group transfer is open to criticism, the basic assumption of the proposed model is that the intrinsic barrier of reaction (38)... 

The chymotiypsin reaction is one example of acyl group transfer (see Fig. 6-21). Glycosyl group transfers involve nucleophilic substitution at C-l of a sugar ring, which is the central atom of an acetal. In principle, the substitution could proceed by an SnI or Sn2 path, as described for the enzyme lysozyme (see Fig. 6-25). 

Nucleophilic attack by an alcohol on the y phosphate (Pig. 13-10a) displaces ADP and produces a new phosphate ester. Studies with 180-labeled reactants have shown that the bridge oxygen in the new compound is derived from the alcohol, not from ATP the group transferred from ATP is a phosphoiyl (—POf-), not a phosphate (—OPOf-). Phosphoiyl group transfer from ATP to glutamate (Fig. 13-8) or to glucose... 

Studies on the kinetic behaviour of nucleoside and nucleotide complexes are less common than those on structural aspects. This arises because of the rapid rates of the formation and dissociation reactions, requiring NMR or temperature-jump relaxation measurements. The number of species that can coexist in solution also hinders interpretation. The earlier kinetic studies have been reviewed by Frey and Stuehr.127 Two important biological reactions of the nucleotides are phosphoryl and nucleotidyl group transfers. Both reactions are catalytic nucleophilic reactions and they both require the presence of a divalent metal ion, in particular Mg2+. Consequently, one of the main interests has been in understanding the catalytic mechanism of the metal ion involvement. This has mainly involved studies on related non-enzymic reactions.128... 

---