Gene neighbor method

Figure 6.3. Gene neighbor method for detecting functional interactions among proteins.

Figure 9.3 Phylogenetic tree of solvento-genic Clostridia based on 16S rRNA gene sequences. Sequences were aligned using ClustalW 1.6 [96]. The phylogenetic tree was obtained by using the neighbor-joining method within MEGA 5.05 software [97]. Numbers at nodes are bootstrap values...

Figure 7.6 Phylogenetic tree of Lactobacillus and Pediococcus species derived from 16S rRNA gene sequence data, using neighbor-joining method for calculation. The bar indicates the number of inferred substitutions per 100 nucleotides. The accession numbers of 16S rRNA gene sequence are shown in parentheses, and the strong beer-spoilage species are underlined.

Figure 2.1. Phylogenetic tree depicting the relationship between families of order Lactobacillales based on 16S rRNA gene sequence. The tree was calculated using Neighbor-Joining and the number of differences as a method. Bootstrap values (1000 replicates) are reported in percentages at nodes. The scale bar represents the number of substitutions per site.

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