Flight tube, metastable fragments

They are metastable ions that occur when excited species leaving the source fragment in the flight tube. Indeed, they do look like lumps that are a few mass units wide. 

A certain amonnt of structural information, snch as sequencing of peptides, can be obtained from single-analyzer MALDl-TOF systems used in the reflectron mode becanse some ions leaving the ion source are metastable (Section 3.3.1.2) and fragment as they move down the flight tube the process is called post-source decay (PSD). The technique is limited because it is not possible to preselect ions for fragmentation and becanse stepwise changes in the parameters of the reflectron are needed to obtain prodnct ion spectra. 

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