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Extended electrostatics

In case of the rigid lock-and-key type receptor forming five hydrogen bonds plus two extended electrostatic attractions (Fig. 3a), one mismatched hydrogen bond will result in only a small reduction in overall binding free energy 4.18-8.36 kJ mol (1-2 kcal mol ) out of... [Pg.175]

Long-range interactions and extended electrostatics—Chapter 5. [Pg.53]

Figure 7-2. Properties of CAII active site in the COHH state (zinc-bound hydroxide and protonated His 64). (a) Superposition of a few key residues from two stochastic boundary SCC-DFTB/MM simulations with the X-ray structure [87] (colored based on atom-types) the two sets of simulations did not have any cut-off for the electrostatic interactions between SCC-DFTB and MM atoms but used different treatments for the electrostatic interactions among MM atoms group-based extended electrostatics (in yellow) and atom-based force-shift cut-off (in green). Extended electrostatics simulations sampled configurations with the protonated His 64 too close to the zinc moiety while force-shift simulations consistently sampled the out configuration of His 64 in multiple trajectories, (b) Statistics for productive water-bridges (only from two and four shown here) between the zinc bound water and His 64 with different electrostatics protocols... Figure 7-2. Properties of CAII active site in the COHH state (zinc-bound hydroxide and protonated His 64). (a) Superposition of a few key residues from two stochastic boundary SCC-DFTB/MM simulations with the X-ray structure [87] (colored based on atom-types) the two sets of simulations did not have any cut-off for the electrostatic interactions between SCC-DFTB and MM atoms but used different treatments for the electrostatic interactions among MM atoms group-based extended electrostatics (in yellow) and atom-based force-shift cut-off (in green). Extended electrostatics simulations sampled configurations with the protonated His 64 too close to the zinc moiety while force-shift simulations consistently sampled the out configuration of His 64 in multiple trajectories, (b) Statistics for productive water-bridges (only from two and four shown here) between the zinc bound water and His 64 with different electrostatics protocols...
Figure 2. A schematic of the partitioning in the extended electrostatics model. The extended electrostatics model approximates the full electrostatic interaction by partitioning the electric potential and the resulting forces at atom i into a "Near" and an "Extended" contribution. The near contribution, arises from the charged... Figure 2. A schematic of the partitioning in the extended electrostatics model. The extended electrostatics model approximates the full electrostatic interaction by partitioning the electric potential and the resulting forces at atom i into a "Near" and an "Extended" contribution. The near contribution, arises from the charged...
The result of such extended electrostatic energy barriers in... [Pg.314]

Silicone rulflier extender Electrostatic coating Fluidized bed coatings Host all coatings and paints... [Pg.175]

A large, extended electrostatic potential region and weak electrostatic field (hydrophobic) regions appear to favor the potent activity of the compounds. [Pg.68]


See other pages where Extended electrostatics is mentioned: [Pg.454]    [Pg.60]    [Pg.183]    [Pg.185]    [Pg.185]    [Pg.60]    [Pg.25]    [Pg.160]    [Pg.163]    [Pg.164]    [Pg.1518]    [Pg.401]    [Pg.275]    [Pg.35]   
See also in sourсe #XX -- [ Pg.454 ]




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Electrostatic extended

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