Confined model systems introduction

In this chapter we give an introduction and recipe for the full Hopf bifurcation analysis for chemical systems. Rather than work in completely general and abstract terms, we will illustrate the various stages by using the thermokinetic model of the previous chapter, with the exponential approximation for simplicity. We can draw many quantitative conclusions about the oscillatory solutions in that model. In particular we will be able to show (i)that the parameter values given by eqns (4.49) and (4.50) for tr(J) = 0 satisfy all the requirements of the. Hopf theorem (ii)that oscillatory behaviour is completely confined to the conditions for which the stationary state is... 

The results of estimation of coefficient of self-diffusion due to simulation for macromolecules with different lengths are shown in Fig. 12. The introduction of local anisotropy practically does not affect the coefficient of diffusion below the transition point M, the position of which depends on the coefficient of local anisotropy. For strongly entangled systems (M > M ), the value of the index —2 in the reptation law is connected only with the fact of confinement of macromolecule, and does not depend on the value of the coefficient of local anisotropy. At the particular value ae = 0.3, the simulation reproduces the results of the conventional reptation-tube model (see equation (5.21)) and corresponds to the typical empirical situation (M = 10Me). 

The discussion so far has dealt with one-dimensional models which as a rule do not directly apply to real chemical systems for the reasons discussed in the introduction. In this section we discuss how the above methods can be extended to many dimensions. In order not to encumber the text and in order to make physics more transparent, we confine ourselves to two dimensions, although the generalization to more dimensions is straightforward. 

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