Complex systems Coulomb energy differences

Classical electrostatic modeling based on the Coulomb equation demonstrated that the model system chosen could account for as much as 85% of the effect of the protein electric field on the reactants. Several preliminary computations were, moreover, required to establish the correct H-bond pattern of the catalytic water molecule (WAT in Fig. 2.6). Actually, in the crystal structure of Cdc42-GAP complex [60] the resolution of 2.10 A did not enable determination of the positions of the hydrogen atoms. Thus, in principle, the catalytic water molecule could establish several different H-bond patterns with the amino acids of the protein-active site. Both classical and quantum mechanical calculations showed that WAT, in its minimum-energy conformation,... 

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