Compartmentalization, basic principles

Enzyme-based biochemical networks can be designed and analyzed using basic principles of enzyme kinetics and compartmental analysis procedures. 

In the artificial system Figure 4b, a polymerized surfactant vesicle is substituted for the thylakoid membrane. Energy is harvested by semiconductors, rather than by PSI and PSII. Electron transfer is rather simple. Water (rather than C02) is reduced in the reduction half cycle to hydrogen, at the expense of benzyl alcohol. In spite of these differences, the basic principles in plant and mimetic photosyntheses are similar. Components of both are compartmentalized. The sequence of events is identical in both systems energy harvesting, vectorial charge separation, and reduction. 

In order to address the characteristics of biological models, we have to first define the basic principles of biological systems that a supramolecular model may mimic. Among the most important are selective molecular recognition of a molecular entity selective and highly accelerated modification of a substrate (typieal role of enzymes) compartmentalization and selective translocation of chemical species across boundaries (typieal role of biomembranes) harvesting and transformation of energy and self-replication. 

The purpose of this article is to introduce the reader to simple basic concepts and principles of pharmacokinetic/toxicokinetic analysis using both types of models - compartmental and physiologically based. 

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