Coarse-grained Go modeling

Protein folding channels and kinetics of two-state folding 

Global-energy minimum conformation of seguence A3B2AB2ABAB2ABABABA in the AB model with ab —193. 

Dark monomers are hydrophobic (A) and light residues polar (fi). From [200]. 

The last two sums run over all pairs of nonbonded monomers. In the case the pair i,j) forms a native contact, i.e, rcut and rcut, the monomers experience a short- 

Fiuctuations of the simiiarity parameter q and the anguiar overiap parameter Q as functions of the temperature. For comparison, the specific heat (dotted iine) is aiso piotted into this figure. From (200). 

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