Base-pairing, nucleic acids Hoogsteen

The formation of three-stranded nucleic acid complexes was first demonstrated over five decades ago [56] but the possible biological role of an extended triplex was expanded by the discovery of the H-DNA structure in natural DNA samples [57-59]. H-DNA is an intermolecular triplex that is generally of the pyrimidine-purine x pyrimidine type ( dot -Watson-Crick pairing and cross Hoogsteen base paring) and can be formed at mirror repeat sequences in supercoiled plasmids [59]. 

Scheurer and Briischweiler71 calculated 2hJ(N,N) couplings in three nucleic acid base pairs, namely, Watson-Crick uracil-adenine (U A) [4a] and cytosine-guanine (C-G) base pairs [4b] and in the Hoogsteen adenine thymine (A-T) base pair [7]. 

Fig. 16.10. Schematic description of A-U base pairs found in crystals and in double helical nucleic acids. AU62 Watson-Crick A(JS2 reversed Watson-Crick AU32 Hoogsteen AU22 reversed Hoogsteen...

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