Assays, polyketide synthase

ENZ enzyme assays, SC structural composition, MM molecular methods, IL isotopic labeling, IF isotopic fractionation, INH inhibition studies, UNK unknown, LOX lipoxogenase, EPSP synthase 5-enolpyruvylshikimate-3-phosphate, SDH shikimate dehydrogenase, PAL phenylalanine ammonium lyase, PKS polyketide synthase, NRPS nonribosomal peptide synthase 1 Gerwick 1999 2 Liu et al. 1994 3 Boonprab et al. 2003 4 Cvejic and Rohmer 1999 5 Disch et al. 1998 6 Chikaraishi et al. 2006 7 Schwender et al. 2001 8 Schwender et al. 1997 9 Mayes et al. 1993 10 Shick et al. 1999 11 Richards et al. 2006 12 Bouarab et al. 2004 13 Pelletreau et al., unpublished data 14 Dittman and Weigand 2006 15 Rein and Barrone 1999 Empty columns imply no direct evidence of these enzymes from these systems... 

Polyketide synthase enzyme assays contained 100 mM potassium phosphate buffer (pH 7.0), 40 pM malonyl-CoA, 25 pM starter molecule (i.e. palmitoyl-CoA), and 2 pg protein in a 200 pL volume at 30° C for 30 minutes. Reactions were quenched by addition of 10 pL of 20% HCl. The lipid resorcinol products were extracted by phase partitioning with 1 ml of ethyl acetate. The organic phase (upper layer) obtained by centrifugation at -14,000 x g for 1 minute was transferred to a fresh tube, dried under vacuum, and subsequently analyzed by GC/mass spectrometry as a trimethysilyl derivative. Product formation was quantified using selected ion monitoring at m/z 268, a common fragment to all... 

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