Angle-bending parameter

Bond-Stretching Parameters Angle-Bending Parameters ... 

IBAPAR boss36.sb b36aa.sb Contain bond stretching and angle bending parameters... 

The force-field model for ethanol contains C-O and O—H bond-stretching contributions in ethane thiol these are replaced by C—S and S—H parameters. Similarly, in ethanol there will be angle-bending terms due to C—O—H, C—C—O and H—C—O angles in ethane thiol these will be C—S—H, C—C—S and H—C—S. The torsional contribution will be modified appropriately, as will the van der Waals and electrostatic interactions (both those within the... 

The OPLS atom types are a superset of the AMBER united atom types and the bonding parameters are just those of AMBER, supplemented where needed by the OPLS developers. The bond stretch, angle bending, dihedral angle and improper dihedral angle terms are identical to those of AMBER. Unlike AMBER, different combination rules are used for the van der Waals parameters, no hydrogen bonding term is used and no lone pairs are used. 

The functional form for angle bending in BIO+ is quadratic only and is identical with that shown in equation (12) on page 175. The angle bending force constants are in units of kcal/mol per radian2 and are in the file pointed to by the QuadraticBend entry for the parameter set in the Registry or the chem.ini file, usually called ben.txt(dbf). 

The parameter redundancy is also the reason that care should be exercised when trying to decompose energy differences into individual terms. Although it may be possible to rationalize the preference of one conformation over another by for example increased steric repulsion between certain atom pairs, this is intimately related to the chosen functional form for the non-bonded energy, and the balance between this and the angle bend/torsional terms. The rotational banier in ethane, for example, may be reproduced solely by an HCCH torsional energy term, solely by an H-H van der Waals repulsion or solely by H-H electrostatic repulsion. Different force fields will have (slightly) different balances of these terms, and while one force field may contribute a conformational difference primarily to steric interactions, another may have the... 

Figure 4. Schematic illustration of force-constant parameters used in Modified Urey-Bradley Force-Field (MUBFF) vibrational modeling (Simanouti (Shimanouchi) 1949). The MUBFF is a simplified empirical force field that has been used to estimate unknown vibrational frequencies of molecules and molecule-like aqueous and crystalline substances. Here, three force constants (K, H, and describe distortions of a tetrahedral XY molecule, [Cr04] due to bond stretching (Cr-O), bond-angle bending (Z O-Cr-O), and repulsion between adjacent non-bonded atoms (0..0). Less symmetric molecules with more than one type of bond or unequal bond angles require more parameters, but they will belong to the same basic types.

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