Amino acid sequence alignment

Table 6.1 Amino-acid sequence alignment of four mammalian ferritins (Horse L chain, HoL Human L chain, HuL Human H chain, HuH Rat H, RaH) and of one of the ferritins, FTN, and the bacterioferritin, BFR of...

Amino acid-sequence alignments of various LSs and ISs, in combination with site-directed mutagenesis experiments and structural data of family members, have highlighted functional amino acid residues, and has provided first insights into... 

Producing an Amino Acid Sequence Alignment Between the Target and the Template. 296... 

Fig. 11.4 Sequence comparison of Arabidopsis geranyllinalool synthase with other Arabidopsis TPS and putative or characterized linalool and geranyllinalool synthases from Clarkia, Medicago, poplar and grape. A neighbor-joining tree generated from an amino acid sequence alignment (QustalX) of 13 TPS proteins is shown. Numbers are bootstrap values higher than 800 out of 1,000 replicates. TPS proteins belong to different families as indicated by letters. V. vinifera putative GES, Acc. 002268557 P. trichocarpa putative GES, Acc. 002305640...

Fig. 4. Amino acid sequence alignment of the MT-like domains of the putative plant MTs (Fig. 3) with the a and (5 domains of Equine MT and the single domain of N. crassa MT. The numbers refer to the residue positions within the complete protein.

Figure 5. Amino acid sequence alignment of thrombin receptors and PAR-2s from different species along TM4, EC2, and TM5. (See caption to Figure 4 for more details.)...

In Figure 3B an amino acid sequence alignment of the regions containing the conserved motifs of N-mcthy 1 Iransfcrasc domains of peptide synthetases of eukaryotic and prokaryotic origin are shown. 

Figure 11.6. Amino acid sequence alignment at EBI. Amino acid sequences of type C lysozyme are submitted to ClustalW tool of EBI, and the alignment is retrieved from the notified URL...

Gendel, S.M. 1998. The use of amino acid sequence alignments to assess potential allergenicity of proteins used in genetically modified foods. Adv Food NutrRes 42 45-62. 

Knowledge of the three-dimensional structure of ascorbate oxidase and of amino-acid sequences of all members of the blue oxidases made it possible to carry out a structurally based amino-acid sequence alignment 101) involving N. crassa laccase, cucumber ascorbate oxidase, and human ceruloplasmin. The structural basis of this alignment was... 

In the trimer of nitrite reductase a six-domain structure is realized, which is reminiscent of the six-domain structure of ceruloplasmin (112), which was deduced from the amino-acid sequence alignment with the other blue oxidases (101). However, the arrangement of the six gene segments in ceruloplasmin is not simply a triplication of an ancestral... 

Structurally Based Amino-Acid Sequence Alignment of Fungal Laccases, Ascorbate Oxidases, and Related Proteins "... 

Similarity Matrix for the Amino-Acid Sequence Alignment Displayed in Table IV ... 

---