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A Practice Tutorial with an Open-source Tool

1 A Practice Tutorial with an Open-source Tool [Pg.425]

In the following section, we will explore a practical way to text mining biomedical hterature from MEDLINE. For demonstration, we used LingPipe, a free tool available for downloading from the Internet. In order to use LingPipe effectively, the interested readers are encouraged to visit the website and download the jar file or zip file containing all the detailed instractions. Here, we will de- [Pg.425]

Step 1 Fetch URL/PMID based on query to pirblic databases (Intemet/PubMed) Step 2 Retrieve the docrrment or abstracts (LFRL/PMID) [Pg.426]

Step 3 Load the docrrment to database (remove redimdancy) [Pg.426]

Step 4 Retrieve docrrment contents (plain text) seqrrerrtially/distributed way fiom database [Pg.426]




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A Practice Tutorial

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